孙凝晖
职称:

研究员,博导

简历:

1985.09-1989.07:北京大学计算机系学习,获学士学位
1989.09-1992.07:中科院计算所学习,获硕士学位
1995.09-1999.07:中科院计算所在职博士,获博士学位
1996.06-1997.06:美国Princeton大学访问学者
1997.07-1999.02:中科院计算所智能中心研发部副主任
1999.03-2000.02:中科院计算所智能中心研发部主任
2000.03-2002.02:中科院计算所高性能计算机室主任 
2002.03-2005.10:国家智能计算机研究开发中心主任 
2005.10-2009.06: 中科院计算所所长助理兼副总工程师、中科院计算所系统结构研究部主任、中科院计算机系统结构重点实验室主任
2009.07-2011.07: 中科院计算所常务副所长
2011.07 - 至今:中科院计算所所长
2011.10 - 至今:计算机体系结构国家重点实验室主任、学术委员会副主任

研究方向:
并行处理体系结构、分布式操作系统、性能评价及文件系统
社会任职:
1、中国计算机学会副理事长 2、中国计算机学会高性能计算专业委员会主任 3、《计算机学报》主编 4、中国科学院大学计算机与控制学院副院长 5、曙光公司首席科学家 6、中国科大客座教授 7、电子与电气工程师协会(IEEE)会员
获奖及荣誉:

科技奖励:
曙光一号智能化共享存储多处理机系统,获1994年中国科学院科技进步特等奖;1995年国家科技进步二等奖,排名第16位。
曙光1000大规模并行计算机系统,获1996年中国科学院科技进步特等奖;1997年国家科技进步一等奖,排名第5位。
曙光2000大规模并行计算机系统,获2000年中国科学院科技进步一等奖;2001年国家科技进步二等奖,排名第1位。 
曙光系列可扩展并行计算机系统,获2001年中国科学院科技进步二等奖,排名第2位。
曙光3000和可扩展并行计算机系统,获2003年国家科技进步二等奖,排名第1位。
曙光4000系列高性能计算机,获2005年中国科学院杰出科技成就奖,2006年国家科技进步二等奖,排名第1位。
曙光高效能计算机系统关键技术及应用,获2013年国家科技进步二等奖,排名第1位。
人才奖励:
1992年度中科院院长奖学金优秀奖,1999年度中科院院长奖学金优秀奖。
1999年获中国科学院青年科学家奖一等奖。
2000年获得政府特殊津贴。
2006年入选百千万人才工程国家级人选;获第九届“中国青年科技奖” ;获第十七界“中国十大杰出青年”荣誉称号。
2009年获得国家自然科学基金委杰出青年称号。
2014年入选中国科学院“百人计划”。

代表论著:

1.Tao Jiang, Rui Hou, Jianbo Dong, Lin Chai, Sally A. McKee, Bin Tian, Lixin Zhang, Ninghui Sun: Adapting Memory Hierarchies for Emerging Datacenter Interconnects. J. Comput. Sci. Technol. 30(1): 97-109 (2015)
2.Fei Xia, Dejun Jiang, Jin Xiong, Ninghui Sun: A Survey of Phase Change Memory Systems. J. Comput. Sci. Technol. 30(1): 121-144 (2015)
3.Jiuyue Ma, Xiufeng Sui, Ninghui Sun, Yupeng Li, Zihao Yu, Bowen Huang, Tianni Xu, Zhicheng Yao, Yun Chen, Haibin Wang,Lixin Zhang, Yungang Bao: Supporting Differentiated Services in Computers via Programmable Architecture for Resourcing-on-Demand (PARD). ASPLOS 2015: 131-143
4.Zhen Jia, Lei Wang, Jianfeng Zhan, Lixin Zhang, Chunjie Luo, Ninghui Sun: Understanding Big Data Analytic Workloads on Modern Processors. CoRR abs/1504.04974 (2015)
5.Dawei Zang, Zheng Cao, Zhan Wang, Xiaoli Liu, Lin Wang, Ninghui Sun: Decentralized NIC-Switching Architecture Using SR-IOV PCI Express Network Device. IEEE Micro 34(5): 42-50 (2014)
6.Yongbing Huang, Licheng Chen, Zehan Cui, Yuan Ruan, Yungang Bao, Mingyu Chen, Ninghui Sun: HMTT: A hybrid hardware/software tracing system for bridging the DRAM access trace's semantic gap. TACO 11(1): 7 (2014)
7.Jie Yan, Guangming Tan, Ninghui Sun: Exploiting fine-grained parallelism in graph traversal algorithms via lock virtualization on multi-core architecture. The Journal of Supercomputing 69(3): 1462-1490 (2014)
8.Tianshi Chen, Zidong Du, Ninghui Sun, Jia Wang, Chengyong Wu, Yunji Chen, Olivier Temam: DianNao: a small-footprint high-throughput accelerator for ubiquitous machine-learning. ASPLOS 2014: 269-284
9.Xiaoyu Fu, Rui Ren, Sally A. McKee, Jianfeng Zhan, Ninghui Sun: Digging deeper into cluster system logs for failure prediction and root cause diagnosis. CLUSTER 2014: 103-112
10.Huiwei Lv, Guangming Tan, Mingyu Chen, Ninghui Sun: Reducing Communication in Parallel Breadth-First Search on Distributed Memory Systems. CSE 2014: 1261-1268
11.Fei Xia, Dejun Jiang, Jin Xiong, Ninghui Sun: Write-aware random page initialization for non-volatile memory systems. ICCD 2014: 208-215
12.Yong Su, Zheng Cao, Zhiguo Fan, Zhan Wang, Xiaoli Liu, Xiaobing Liu, Li Qiang, Xuejun An, Ninghui Sun: Building a large-scale direct network with low-radix routers. ICPADS 2014: 368-375
13.Fei Xia, Dejun Jiang, Jin Xiong, Mingyu Chen, Lixin Zhang, Ninghui Sun: DWC: dynamic write consolidation for phase change memory systems. ICS 2014: 211-220
14.Tao Jiang, Qianlong Zhang, Rui Hou, Lin Chai, Sally A. McKee, Zhen Jia, Ninghui Sun: Understanding the behavior of in-memory computing workloads. IISWC 2014: 22-30
15.Zigang Zhang, Yinliang Yue, Bingsheng He, Jin Xiong, Mingyu Chen, Lixin Zhang, Ninghui Sun: Pipelined Compaction for the LSM-Tree. IPDPS 2014: 777-786
16.Yunji Chen, Tao Luo, Shaoli Liu, Shijin Zhang, Liqiang He, Jia Wang, Ling Li, Tianshi Chen, Zhiwei Xu, Ninghui Sun, Olivier Temam: DaDianNao: A Machine-Learning Supercomputer. MICRO 2014: 609-622
17.Huiwei Lv, Guangming Tan, Mingyu Chen, Ninghui Sun: Understanding parallelism in graph traversal on multi-core clusters. Computer Science - R&D 28(2-3): 193-201 (2013)
18.Jie Yan, Guangming Tan, Ninghui Sun: Optimizing Parallel S n Sweeps on Unstructured Grids for Multi-Core Clusters. J. Comput. Sci. Technol. 28(4): 657-670 (2013)
19.Jie Yan, Guangming Tan, Xiuxia Zhang, Erlin Yao, Ninghui Sun: Vlock: Lock virtualization mechanism for exploiting fine-grained parallelism in graph traversal algorithms. CGO 2013: 21:1-21:10
20.Nongda Hu, Dawei Wang, Zheng Cao, Xuejun An, Ninghui Sun: Accelerating Allreduce Operation: A Switch-Based Solution. ICCCN 2013: 1-8
21.Xiaochun Ye, Dongrui Fan, Ninghui Sun, Shibin Tang, Mingzhe Zhang, Hao Zhang: SimICT: A fast and flexible framework for performance and power evaluation of large-scale architecture. ISLPED 2013: 273-278
22.Yong Su, Feilong Liu, Zheng Cao, Zhan Wang, Xiaoli Liu, Xuejun An, Ninghui Sun: cHPP controller: A High Performance Hyper-node Hardware Accelerator. PDCAT 2013: 117-123
23.Jiajia Li, Guangming Tan, Mingyu Chen, Ninghui Sun: SMAT: an input adaptive auto-tuner for sparse matrix-vector multiplication. PLDI 2013: 117-126
24.Jie Yan, Guangming Tan, Ninghui Sun: GRE: A Graph Runtime Engine for Large-Scale Distributed Graph-Parallel Applications.CoRR abs/1310.5603 (2013)
25.Chunjie Luo, Jianfeng Zhan, Zhen Jia, Lei Wang, Gang Lu, Lixin Zhang, Cheng-Zhong Xu, Ninghui Sun: CloudRank-D: benchmarking and ranking cloud computing systems for data processing applications. Frontiers of Computer Science 6(4): 347-362 (2012)
26.Dongrui Fan, Hao Zhang, Da Wang, Xiaochun Ye, Fenglong Song, Guojie Li, Ninghui Sun: Godson-T: An Efficient Many-Core Processor Exploring Thread-Level Parallelism. IEEE Micro 32(2): 38-47 (2012)
27.Shuai Jiao, Paolo Ienne, Xiaochun Ye, Da Wang, Dongrui Fan, Ninghui Sun: CRAW/P: A Workload Partition Method for the Efficient Parallel Simulation of Manycores. Euro-Par 2012: 102-114
28.Wen Tang, Wendi Wang, Bo Duan, Chunming Zhang, Guangming Tan, Peiheng Zhang, Ninghui Sun: Accelerating Millions of Short Reads Mapping on a Heterogeneous Architecture with FPGA Accelerator. FCCM 2012: 184-187
29.Wendi Wang, Bo Duan, Wen Tang, Chunming Zhang, Guangming Tan, Peiheng Zhang, Ninghui Sun: A coarse-grained stream architecture for cryo-electron microscopy images 3D reconstruction. FPGA 2012: 143-152
30.Shuai Jiao, Da Wang, Xiaochun Ye, Weizhi Xu, Hao Zhang, Ninghui Sun: PartitionSim: A Parallel Simulator for Many-cores.HPCC-ICESS 2012: 119-126
31.Shuai Jiao, Da Wang, Xiaochun Ye, Weizhi Xu, Hao Zhang, Ninghui Sun: ALWP: A Workload Partition Method for the Efficient Parallel Simulation of Manycores. HPCC-ICESS 2012: 135-142
32.Jiajia Li, Xingjian Li, Guangming Tan, Mingyu Chen, Ninghui Sun: An optimized large-scale hybrid DGEMM design for CPUs and ATI GPUs. ICS 2012: 377-386
33.Tao Jiang, Rui Hou, Lixin Zhang, Ke Zhang, Licheng Chen, Mingyu Chen, Ninghui Sun: Micro-architectural characterization of desktop cloud workloads. IISWC 2012: 131-140
34.Erlin Yao, Rui Wang, Mingyu Chen, Guangming Tan, Ninghui Sun: A Case Study of Designing Efficient Algorithm-based Fault Tolerant Application for Exascale Parallelism. IPDPS 2012: 438-448
35.Wendi Wang, Wen Tang, Linchuan Li, Guangming Tan, Peiheng Zhang, Ninghui Sun: Investigating Memory Optimization of Hash-index for Next Generation Sequencing on Multi-core Architecture. IPDPS Workshops 2012: 665-674
36.Jianfeng Zhan, Lixin Zhang, Ninghui Sun, Lei Wang, Zhen Jia, Chunjie Luo: High Volume Throughput Computing: Identifying and Characterizing Throughput Oriented Workloads in Data Centers. IPDPS Workshops 2012: 1712-1721
37.Jianfeng Zhan, Lixin Zhang, Ninghui Sun, Lei Wang, Zhen Jia, Chunjie Luo: High Volume Throughput Computing: Identifying and Characterizing Throughput Oriented Workloads in Data Centers . CoRR abs/1202.6134 (2012)
38.Huiwei Lv, Guangming Tan, Mingyu Chen, Ninghui Sun: Compression and Sieve: Reducing Communication in Parallel Breadth First Search on Distributed Memory Systems . CoRR abs/1208.5542 (2012)
39.Ninghui Sun, Jing Xing, Zhigang Huo, Guangming Tan, Jin Xiong, Bo Li, Can Ma: Dawning Nebulae: A PetaFLOPS Supercomputer with a Heterogeneous Structure. J. Comput. Sci. Technol. 26(3): 352-362 (2011)
40.Xingkui Liu, Xinchun Liu, Ninghui Sun: Fast and Compact Regular Expression Matching Using Character Substitution. ANCS 2011: 85-86
41.Zheng Cao, Hongwei Tang, Qiang Li, Bo Li, Fei Chen, Kai Wang, Xuejun An, Ninghui Sun: Design of HPC Node with Heterogeneous Processors. CLUSTER 2011: 130-138
42.Bo Duan, Wendi Wang, Xingjian Li, Chunming Zhang, Peiheng Zhang, Ninghui Sun: Floating-point mixed-radix FFT core generation for FPGA and comparison with GPU and CPU. FPT 2011: 1-6
43.Huafeng Xi, Jianfeng Zhan, Zhen Jia, Xuehai Hong, Lei Wang, Lixin Zhang, Ninghui Sun, Gang Lu: Characterization of real workloads of web search engines. IISWC 2011: 15-25
44.Dawei Wang, Xian-He Sun, Nongda Hu, Ninghui Sun: EthSpeeder: A High-performance Scalable Fault-Tolerant Ethernet Network Architecture for Data Center. NAS 2011: 355-363
45.Qiang Li, Zhigang Huo, Ninghui Sun: Optimizing MPI Alltoall Communication of Large Messages in Multicore Clusters. PDCAT 2011: 257-262
46.Guangming Tan, Linchuan Li, Sean Triechle, Everett H. Phillips, Yungang Bao, Ninghui Sun: Fast implementation of DGEMM on Fermi GPU. SC 2011: 35:1-35:11
47.Fei Chen, Zheng Cao, Kai Wang, Xuejun An, Ninghui Sun: HPP controller: a system controller for high performance computing. Frontiers of Computer Science in China 4(4): 456-465 (2010)
48.Qiang Li, Bo Li, Zhigang Huo, Ninghui Sun: Design and implementation of communication system of the Dawning 6000 supercomputer. Frontiers of Computer Science in China 4(4): 466-474 (2010)
49.Ninghui Sun, David K. Kahaner, Debbie Chen: High-performance Computing in China: Research and Applications. IJHPCA 24(4): 363-409 (2010)
50.Liu Peng, Guangming Tan, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta, Dongrui Fan, Ninghui Sun: Preliminary Investigation of Accelerating Molecular Dynamics Simulation on Godson-T Many-Core Processor. Euro-Par Workshops 2010: 349-356
51.Qiang Li, Zhigang Huo, Ninghui Sun: Building a Personal High Performance Computer with Heterogeneous Processors. GCC 2010: 223-228
52.Kai Wang, Fei Chen, Zheng Cao, Xuejun An, Ninghui Sun: Adding an Expressway to Accelerate the Neighborhood Communication. HPCC 2010: 43-48
53.Qingbo Yuan, Jianbo Zhao, Mingyu Chen, Ninghui Sun: GenerOS: An asymmetric operating system kernel for multi-core systems. IPDPS 2010: 1-10
54.Huiwei Lv, Yuan Cheng, Lu Bai, Mingyu Chen, Dongrui Fan, Ninghui Sun: P-GAS: Parallelizing a Cycle-Accurate Event-Driven Many-Core Processor Simulator Using Parallel Discrete Event Simulation. PADS 2010: 89-96
55.Mingyuan An, Yang Wang, Weiping Wang, Ninghui Sun: Integrating DBMSs as a Read-Only Execution Layer into Hadoop. PDCAT 2010: 17-26
56.Kai Wang, Fei Chen, Zheng Cao, Xuejun An, Ninghui Sun: HPP Controller: A System Controller Dedicated for Message Passing. PDCAT 2010: 261-266
57.Wendi Wang, Bo Duan, Chunming Zhang, Peiheng Zhang, Ninghui Sun: Accelerating 2D FFT with Non-Power-of-Two Problem Size on FPGA. ReConFig 2010: 208-213
58.Jianwei Xu, Mingyu Chen, Gui Zheng, Zheng Cao, Huiwei Lv, Ninghui Sun: SimK: A Large-Scale Parallel Simulation Engine. J. Comput. Sci. Technol. 24(6): 1048-1060 (2009)
59.Guangming Tan, Ninghui Sun, Guang R. Gao: Improving Performance of Dynamic Programming via Parallelism and Locality on Multicore Architectures. IEEE Trans. Parallel Distrib. Syst. 20(2): 261-274 (2009)
60.Qiang Li, Panyong Zhang, Ninghui Sun: HPP-Controller: An intra-node controller designed for connecting heterogeneous CPUs. CLUSTER 2009: 1-4
61.Guangming Tan, Dengbiao Tu, Ninghui Sun: A Parallel Algorithm for Computing Betweenness Centrality. ICPP 2009: 340-347
62.Hua Cheng, Zuoning Chen, Ninghui Sun, Fenbin Qi, Chaoqun Dong, Laiwang Cheng: A Virtualized Self-Adaptive Parallel Programming Framework for Heterogeneous High Productivity Computers. ISPA 2009: 543-548
63.Huaiming Song, Mingyuan An, Yang Wang, Weiping Wang, Ninghui Sun: Group-by Query Process in Middleware of Large Scale Data Intensive Systems. NAS 2009: 82-89
64.Qingbo Yuan, Yungang Bao, Mingyu Chen, Ninghui Sun: A Scalability Analysis of the Symmetric Multiprocessing Architecture in Multi-Core System. NAS 2009: 231-234
65.Kai Wang, Xiaomin Li, Xuejun An, Ninghui Sun: Gemini NI: An Integration of Two Network Interfaces. NAS 2009: 439-446
66.Jing Xing, Jin Xiong, Ninghui Sun, Jie Ma: Adaptive and scalable metadata management to support a trillion files. SC 2009
67.Zheng Cao, Jianwei Xu, Mingyu Chen, Gui Zheng, Huiwei Lv, Ninghui Sun: HPPNetSim: a parallel simulation of large-scale interconnection networks. SpringSim 2009
68.刘莹,王启荣, 孙凝晖, 基于SN结构的事件流并行数据库加载均衡策略研究,计算机研究与发展,2009, (1),p.161-博导计算机软件与理论
69.Xiaojun Yang, Fei Chen, Hailiang Cheng, Ninghui Sun: A HyperTransport-based personal parallel computer. CLUSTER 2008: 126-132
70.Huan Chen, Jin Xiong, Ninghui Sun: A novel hint-based I/O mechanism for centralized file server of cluster. CLUSTER 2008: 194-201
71.Jing Xing, Jin Xiong, Jie Ma, Ninghui Sun: Memory Based Metadata Server for Cluster File Systems. GCC 2008: 287-291
72.Huaiming Song, Yang Wang, Mingyuan An, Weiping Wang, Ninghui Sun: Query Prediction in Large Scale Data Intensive Event Stream Analysis Systems. GCC 2008: 301-308
73.Dawei Wang, Zheng Cao, Xinchun Liu, Ninghui Sun: HPP Switch: A Novel High Performance Switch for HPC. Hot Interconnects 2008: 145-153
74.孙凝晖,陈国良,PHPC:一种普及型高性能计算机,中国科学技术大学学报, 2008, 38(7), 745-752
75.杨卫兵,孙凝晖,TIPSec安全传输协议的设计和实现,计算机工程, 2008, 34(14), 143-145
76.方志斌,胡鹏,安学军,孙凝晖,龙芯2E多处理器芯片组的设计与实现,计算机应用研究, 2008, 25(5), 1465-1469,1473
77.方志斌,孙凝晖,安学军,胡鹏,多处理器芯片组中PCI桥控制器的设计与实现,计算机工程, 2008, 34(1), 241-243
78.孙凝晖,李凯,陈明宇,HPP:一种支持高性能和效用计算的体现结构,计算机学报,2008,31(9),p.1503-1508
79.Ninghui Sun, Dan Meng: Dawning4000A high performance computer. Frontiers of Computer Science in China 1(1): 20-25 (2007)
80.Xianyang Jiang, Xinchun Liu, Lin Xu, Peiheng Zhang, Ninghui Sun: A Reconfigurable Accelerator for Smith-Waterman Algorithm. IEEE Trans. on Circuits and Systems 54-II(12): 1077-1081 (2007)
81.Guangming Tan, Shengzhong Feng, Ninghui Sun: Cache oblivious algorithms for nonserial polyadic programming. The Journal of Supercomputing 39(2): 227-249 (2007)
82.Jianfeng Zhan, Lei Wang, Bibo Tu, Zhihong Zhang, Yu Wen, Yuansheng Chen, Wei Zhou, Dan Meng, Ninghui Sun: A layered design methodology of cluster system stack. CLUSTER 2007: 404-409
83.Huan Chen, Yi Zhao, Jin Xiong, Jie Ma, Ninghui Sun: United-FS: A Logical File System Providing a Single Image of Multiple Physical File Systems on NFS Server. IPDPS 2007: 1-7
84.Xiaojun Yang, Dongdong Wu, Ninghui Sun: Design of NIC Based on I/O Processor for Cluster Interconnect Network. IEEE NAS 2007: 3-8
85.Ninghui Sun: HPP: an architecture for high performance and utility computing. China HPC 2007: 25-31
86.Jianfeng Zhan, Lei Wang, Bibo Tu, Hui Wang, Zhihong Zhang, Yi Jin, Yu Wen, Yuansheng Chen, Peng Wang, Bizhu Qiu, Dan Meng, Ninghui Sun: The design methodology of Phoenix cluster system software stack. China HPC 2007: 174-182
87.Guangming Tan, Ninghui Sun, Guang R. Gao: A parallel dynamic programming algorithm on a multi-core architecture. SPAA 2007: 135-144
88.周小成,孙凝晖,霍志刚,马捷,一种降低并行程序检查点开销的方法,计算机工程, 2007, 33(12), 84-86
89.霍志刚,马捷,孙凝晖,一个基于通信系统支持的并行检查点系统,计算机工程, 2007, 33(5), 217-219
90.陈欢,范志华,熊劲,孙凝晖,影响文件系统性能的若干因素的实验,计算机工程, 2007, 33(8), 74-76
91.宋怀明,焦丽梅,孙凝晖,一种数据库中间件的配置服务的研究和实现,小型微型计算机系统, 2007, 28(3), 438-442
92.孙小涓, 孙凝晖, 陈明宇, 多核平台上B-NIDS的优化, 计算机研究与发展, 44(10), 2007, p 1733-1740
93.Guangming Tan, Lin Xu, Dongbo Bu, Shengzhong Feng, Ninghui Sun: Improvement of Performance of MegaBlast Algorithm for DNA Sequence Alignment. J. Comput. Sci. Technol. 21(6): 973-978 (2006)
94.Jianfeng Zhan, Gengpu Liu, Lei Wang, Bibo Tu, Yi Jin, Yang Li, Yan Hao, Xuehai Hong, Dan Meng, Ninghui Sun: PhoenixG: A Unified Management Framework for Industrial Information Grid. CCGRID 2006: 489-496
95.Guangming Tan, Liu Peng, Shengzhong Feng, Ninghui Sun: Load Balancing and Parallel Multiple Sequence Alignment with Tree Accumulation. Euro-Par 2006: 1138-1147
96.Huan Chen, Rongfeng Tang, Yi Zhao, Jin Xiong, Jie Ma, Ninghui Sun: Research on Key Technologies of Load Balancing for NFS Server with Multiple Network Paths. GCC Workshops 2006: 407-411
97.Guangming Tan, Ninghui Sun, Dongbo Bu: Improving locality of nonserial polyadic dynamic programming. IPDPS 2006
98.Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Sun: An experimental study of optimizing bioinformatics applications. IPDPS 2006
99.Guangming Tan, Shengzhong Feng, Ninghui Sun: Biology - Locality and parallelism optimization for dynamic programming algorithm in bioinformatics. SC 2006: 78
100.谭光明, 冯圣中, 孙凝晖, RNA二级结构预测中动态规划的优化和有效并行,软件学报, 17 (7):1501-1509 ,2006
101.谭光明,徐琳,周幼英,冯圣中,孙凝晖,基于曙光4000A的BLAST并行算法,计算机工程, 2006, 32(10), 45-46,49
102.杨晓君,孙凝晖,郭黎利,基于内存总线的高性能I/O接口设计,哈尔滨工业大学学报, 2006, 38(11), 1935-1938
103.张庆丹,戴正华,冯圣中,孙凝晖,基于GPU的串匹配算法研究,计算机应用, 2006, 26(7), 1735-1737
104.江先阳,刘新春,张佩珩,孙凝晖,徐志伟,计算密集型体系集成DDR SDRAM控制器设计,计算机工程与科学, 2006, 28(3), 96-97,101
105.徐琳,李晓民,谭光明,刘新春,卜东波,冯圣中,孙凝晖,面向FPGA的RNA二级结构预测并行算法研究,计算机学报,2: 233-238,2006
106.Xiaojuan Sun, Xinliang Zhou, Ninghui Sun, Mingyu Chen: Parallel Optimization Technology for Backbone Network Intrusion Detection System. CIS (2) 2005: 322-327
107.Jin Xiong, Rongfeng Tang, Sining Wu, Dan Meng, Ninghui Sun: An Efficient Metadata Distribution Policy for Cluster File Systems. CLUSTER 2005: 1-10
108.Jianfeng Zhan, Ninghui Sun: Fire Phoenix Cluster Operating System Kernel and its Evaluation. CLUSTER 2005: 1-9
109.Guangming Tan, Xinchun Liu, Ninghui Sun: An Efficient Dynamic Programming Algorithm and Implementation for RNA Secondary Structure Prediction. International Conference on Computational Science (2) 2005: 869-876
110.Guangming Tan, Shengzhong Feng, Ninghui Sun: Exploiting Parallelization for RNA Secondary Structure Prediction in Cluster.International Conference on Computational Science (3) 2005: 979-982
111.Guangming Tan, Lin Xu, Yishan Jiao, Shengzhong Feng, Dongbo Bu, Ninghui Sun: An Optimized Algorithm of High Spatial-temporal Efficiency for MegaBlast. ICPADS (2) 2005: 704-708
112.Taoying Liu, Zhiwei Xu, Ninghui Sun, Dan Meng: Destructive Transaction: Human-Oriented Cluster System Management Mechanism. IPDPS 2005
113.Xiaocheng Zhou, Zhigang Huo, Ninghui Sun, Yingchao Zhou: Impact of Page Size on Communication Performance. IPDPS 2005
114.Guangming Tan, Shengzhong Feng, Ninghui Sun: Load Balancing Algorithm in Cluster-based RNA secondary structure Prediction. ISPDC 2005: 91-96
115.陈曜,杨卫兵,刘勇,孙凝晖,一种基于智能网卡的无中断通信的实现,计算机工程, 2005, 31(22), 136-139
116.刘勇,杨卫兵,陈曜,孙凝晖,智能网卡驱动程序的性能评价,计算机工程, 2005, 31(14), 42-44,47
117.李慧,孙凝晖,李晓林,实例研究:一个信息系统的SLA评价,计算机应用研究, 2005, 22(5), 179-180,193
118.刘莹,焦丽梅,孙凝晖,基于ServerScope的TCP/IP负载发生器的研究,小型微型计算机系统, 2005, 26(5), 850-854
119.冯圣中,谭光明,徐琳,孙凝晖,徐志伟,曙光4000H生物信息处理专用计算机的高性能算法研究,计算机研究与发展,43(6): 1053 -1058,2005
120.刘莹,杨卫兵,孙凝晖,智能网卡驱动程序的性能评价,计算机工程, v 31, n 14, Jul 20, 2005, p 42-44,47
121.杨卫兵, 孙凝晖, 陈明宇, 曙光4000A中网格路由器的实现, 计算机研究与发展, v 42, n 6, June, 2005, p 1013-1018
122.Xiaojun Yang, Lili Guo, Peiheng Zhang, Ninghui Sun: Design of System Area Network Interface Card Based on Intel IOP310. ICESS 2004: 165-171
123.孟丹, 孙凝晖, 徐志伟, 高性能计算机曙光4000A的网格使能特征, 计算机研究与发展t, v 41, n 12, December, 2004, p 2079-2087
124.刘新宇,高文,孙凝晖,双机热备份机群的可信性建模分析与比较,小型微型计算机系统, 2004, 25(4), 747-751
125.苗彦超,周应超,郝敏,孙凝晖,视频服务器负载调度策略,微电子学与计算机, 2004, 21(1), 79-82
126.Jin Xiong, Sining Wu, Dan Meng, Ninghui Sun, Guojie Li: Design and Performance of the Dawning Cluster File System. CLUSTER 2003: 232
127.孟丹,肖利民,孙凝晖,徐志伟,曙光3000超级服务器软件系统,高性能计算技术,2003年第五期
128. 孙凝晖,樊建平,Dagger:一种散耦合的网格计算机体系结构,计算机研究与发展,2003年第12期第40卷
129.焦丽梅,孙凝晖,褚兴军,ServerScope: 一种新的性能评测系统的提出,计算机工程与应用, 2003年第13期第39卷
130.苗彦超,周应超,郝敏,孙凝晖,杨晓君,高帆,基于IP网络的视频点播服务传输控制,微电子学与计算机,第20卷 2003年第7期
131.苗彦超,杨晓君,赵毅,孙凝晖, 基于CATV网络的视频服务器设计, 微电子学与计算机,第20卷 2003年第6期
132.刘新宇,高文,孙凝晖,双机热备份机群的可信性建模分析与比较,小型微型计算机系统,2003
133.刘淘英,李小林,李伟,孙凝晖,徐志伟,关于一种网格运行时结构的若干注记,计算机研究与发展,2003
134.Xinyu Liu, Wen Gao, Ninghui Sun: NCPN: A Simulation Tool for Coloured Petri Nets. IASTED PDCS 2002: 266-271
135.熊劲,孙凝晖,机群资源管理的设计与实现,计算机学报,Vol.25, No.12, 2002年12月
136.孙凝晖,孟丹,曙光3000超级服务器设计的关键问题研究,计算机学报,Vol.25, No.11, 2002年11月
137.孙凝晖,刘淘英,支持网格的机群操作系统的设计,计算机研究与发展,第39卷,第8期,2002年8月
138.Zhiwei Xu, Ninghui Sun, Dan Meng, Wei Li: Cluster and Grid Superservers: The Dawning Experiences in China. CLUSTER 2001: 351-358
139.Xiong Jin and Sun Ninghui, The Scalability and Availability in Cluster Resource Management, Proceedings of HPC Asia 2001, Gold Coast, Queensland Australia, Sept. 24-28, 2001
140.Ming Wu, Guoliang Chen, Ninghui Sun, Jigang Wu, The Design and Analysis of User's Environment of Dawning-2000II, In Proceedings of HPC-Asia'2000, P.470-472, Beijing, 2000
141.Huakai Zhang, Ninghui Sun, Implementation and Evaluation of Scalable I/O API on Cluster systems, In Proceedings of HPC-Asia'2000, P.42-46, Beijing, 2000
142.Xingfu Wu, Ninghui Sun, DPVM: PVM for Dawning Cluster systems, In Proceedings of HPC-Asia'2000, P.88-93, Beijing, 2000
143.赵鹏,孙凝晖,徐志伟,基于曙光机群的PVM的设计与实现,中国科学院研究生院学报,P.100-107,Vol.17,NO.1,2000年11月
144.吴明,陈国良,孙凝晖,并行计算机用户环境的设计与实现,计算机学报, P.1021-1027,23卷,Vol.23,No.10,2000年10月
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146.Ninghui Sun: Reference implementation of scalable I/O low-level API on Intel Paragon. J. Comput. Sci. Technol. 14(3): 206-223
147.Ninghui Sun, Wenzhuo Liu, Hong Liu, Chuanbao Wang, Xuelin Lu, Hao Zhang: Dawning-1000 PROOS distributed operating system. J. Comput. Sci. Technol. 12(2): 160-166
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承担科研项目情况:

2015.1-2016.12,负责863计划重大项目课题"E级超级计算机新型体系结构及关键技术路线研究",负责总体设计。
2015.1-2019.12,负责国家自然科学基金国际合作与交流项目"高效通用数据中心体系结构研究",负责总体设计。
2010.1-2013.12,负责国家自然科学基金杰青项目"Exascale计算的基础研究",负责总体设计。
2009.1-2010.10,负责863计划重大项目课题"曙光6000千万亿次高效能计算机系统研制",负责总体设计。
2008.1-2010.12,负责中科院知识创新工程重大项目“面向蛋白质科学的高性能计算研究”,负责总体设计。
2007.1-2010.12,负责国家自然科学基金重点项目“超并行计算机体系结构研究”,负责HPP体系结构的研究。
2006.9-2008.12,负责863计划重大项目“曙光5000A高效能计算机”,负责总体设计。
2005.3-2006.12,负责中科院知识创新工程重要方向项目“新一代机群关键技术研究”,负责总体设计。
2002.10-2004.6, 负责863计划重大项目“面向网格的高性能计算机-曙光4000”,负责总体设计。
2001.3-2003.2,负责中科院计算所知识创新工程重要方向项目“曙光4000L超级服务器”,负责总体设计。
2000.2-2001.2,负责863计划重大项目“曙光3000超级服务器”,负责总体设计。 
1999.1-2000.1,负责863计划重大项目“曙光2000-II超级服务器”,负责总体设计。
1997.3-1998.12,做为技术负责人承担863计划重大项目“曙光2000-I超级服务器”,负责系统软件总体设计和系统的工程实施。
1996.5-1997.7,在Princeton大学参加美国NSF重大项目“Scalable I/O Initiative”,负责Low-Level API的设计和在Intel Paragon上的参考实现。
1992.12-1995.5,参加863计划重大项目“曙光1000大规模并行计算机系统”, 负责系统软件部分。
1992.8-1993.10,参加863计划重大项目“曙光一号”共享存储多处理机系统”,负责性能评价部分。